species:   Scscl
pid:       PID1726
parent:    Ssc-milR-202
paralog:   
locus:     NC_035155.1:9650-9692
matures:   ['UGAGGAGGUAGGAGGGGAG', 'CCCCCCCCGCCUCCUCAAC']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NC_035155.1:9650-9692

3 out of bounds
14 alignments
6 proper strand
2 stranded perfect matches

********************  *********************
CCCCCCCCCGCCUCCUCAACCAGUUGAGGAGGUAGGAGGGGAG
.((((.((.((((((((((....)))))))))).)).))))..
------------------------UGAGGAGGUAGGAGGGGAG l=19 a=0 c
-CCCCCCCCGCCUCCUCAAC----------------------- l=19 a=0 c*
----------------CAACCAGUUGAGGAGGUAGGAGGGGA- l=26 a=1 ma
-CCCCCCCCGCCUCCUCAAC----------------------- l=19 a=0 ma*

---------------UCAACCAGUUGAGGAGGUAa-------- l=20 a=1 
---------------UCAACCAGUUGAGGAGGUAc-------- l=20 a=1 
---------------UCAACCAaUUGAGGAGGUAGGA------ l=22 a=1 
----------------CAACCAGUUGAGGAGGUAGGAGGGGA- l=26 a=1 (ma)
-----------------AACCAGUUGAGGAGGUAGGAGGG--- l=23 a=1 
--------------------CAGUUGAGGAGGUAGGAc----- l=18 a=1 

mb-00010
ax-1011001
ku-01
ss-100010011100
fn-001
